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博碩士論文 etd-0116108-160057 詳細資訊
Title page for etd-0116108-160057
論文名稱
Title
石斑神經壞死似病毒顆粒之特性分析
The Characteristic Analysis of DGNNV Virus-Like Particles
系所名稱
Department
畢業學年期
Year, semester
語文別
Language
學位類別
Degree
頁數
Number of pages
73
研究生
Author
指導教授
Advisor
召集委員
Convenor
口試委員
Advisory Committee
口試日期
Date of Exam
2007-03-02
繳交日期
Date of Submission
2008-01-16
關鍵字
Keywords
龍膽石斑神經壞死病毒、似病毒顆粒、酸鹼值
DGNNV, virus-like particles, pH-dependent
統計
Statistics
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中文摘要
魚類神經壞死病毒造成多種高經濟魚種的死亡。本篇研究以龍膽石斑神經壞死病毒(DGNNV)之似病毒顆粒(wt-VLPs)以及將殼蛋白的N端截短25個氨基酸之似病毒顆粒(ΔN25-VLPs)為題材。經由拆解及組裝的機制,證明wt-VLPs能包裹大小為608 bp 的DNA。純化過程中不同酸鹼值會影響VLPs的沈降速率,酸鹼值越高沈降速率越小;而純VLPs的穩定性則不受酸鹼值的影響。以電子顯微鏡觀察wt-VLPs在酸鹼值不同下之形態,觀察到偏鹼性時 wt-VLPs 則呈現鬆散且不規則的形狀,並且會有空心的形態產生,而偏酸性的 wt-VLPs 呈現緊實的形態。以西方點墨法分析wt-VLPs 與溶菌酶的抗體抗原結合反應,結果顯示 wt-VLPs 與 lysozyme 有共沈澱之反應。
Abstract
Fish nodavirus causes the death of several high economic fish. For studying the package and stability of dragon grouper necrosis virus (DGNNV), wild type virus-like particles (wt-VLPs) and ΔN25-VLPs were employed. After experiments of disassembly and assembly, the result showed that DNA of 608 bp was able to be packaged by wt-VLPs. The sedimentation of VLPs was affected by different pH buffers during the process of purification: the VLPs at alkaline conditions behaved faster than those at the acidic. The stability of pure VLPs was pH-independent. The micrographs of the wt-VLPs in alkaline buffers showed that particles were rough and irregular in shapes, some of which were stain-permeable. However, the wt-VLPs in acidic buffers were morphologically indistinguishable from the untreated VLPs. The Western blotting for gradiently purified miture of VLPs and lysozyme revealed that lysozyme was co-precipitated with wt-VLPs.
目次 Table of Contents
謝誌 I
摘要 II
Abstract III
圖目錄 VI
壹、前言 1
一、 台灣石斑魚現今概況: 1
二、 魚類神經壞死病毒: 3
三、 感染Betanodavirus之臨床病徵: 4
四、 Betanodavirus的傳播: 4
五、 神經壞死病毒的感染途徑: 5
六、 Nodavirus基因體及其遺傳物質之特性: 7
七、 魚類神經壞死病毒之防疫: 11
八、 似病毒顆粒(Virus-like particles, VLPs): 12
九、 研究目的: 16
貳、材料與方法: 17
一、 似病毒顆粒之製備與純化: 17
二、 似病毒顆粒之拆解與包裹: 18
三、 DNA 的萃取: 18
四、 DNA 電泳: 19
五、 蛋白質定量(Lowry method): 19
六、 不同酸鹼值的緩衝溶液: 20
七、 SDS-PAGE蛋白質電泳: 20
八、 VLPs和抗溶菌酶抗體之結構相似度分析: 21
九、 抗VLP之小鼠血清製備: 21
十、 抗Lysozyme之小鼠血清製備: 22
十一、 西方點墨法(Western blotting): 22
十二、 流式分光光度計及自動分樣器: 23
十三、 總RNA的抽取: 24
十四、 RNA 電泳: 24
十五、 負染色: 25
參、 結果 26
一、 純化DGNNV wt-VLPs (似病毒顆粒): 26
二、 VLPs包裹遺傳物質: 26
三、 在純化過程中酸鹼值對 DGNNV wt-VLPs的影響: 26
四、 DGNNV wt-VLPs 在不同酸鹼度下之穩定性: 27
五、 酸鹼值對似病毒顆粒形態的影響: 28
六、 純化ΔN25-VLPs: 29
七、 在純化過程中酸鹼值對ΔN25-VLPs產量的影響: 29
八、 ΔN25-VLPs 在不同酸鹼值下之穩定性: 30
九、 溶菌酶(Lysozyme) 和wt-VLPs之共沈澱反應: 30
肆、 參考文獻 37
伍、 圖表 46
參考文獻 References
呂明偉。2003。龍膽石斑神經壞死病毒外殼蛋白與其似病毒顆粒之研究。國立中山大學海洋資源所,博士論文。
劉旺達。2005。龍膽石斑神經壞死病毒入侵SSN-1細胞初期之機轉。國立中山大學海洋資源所,博士論文。
鄧火土。1985。水產養殖。豐年叢書。
柯德宏。1993。石斑魚類的繁養殖。海水魚繁殖大全。養魚世界雜誌社。
Arimoto, M., Mori, K., Nakai, T., Muroga, K. & Furusawa, I. (1993). Pathogenicity of the causative agent of viral nervous necrosis disease in striped jack, Pseudocaranx dentex (Bloch & Schneider). Journal of Fish Diseases 16, 461–469.
Aranguren, R., Tafalla, C., Novoa, B. & Figueras, A. (2002). Nodavirus replication in a turbot cell line. Journal of Fish Diseases 25, 361-366.
Ball, L. A. (1995). Requirements for the self-directed replication of flock house virus RNA. Journal of Virolgy 69, 720-727.
Baker, T. S., Newcomb, W. W., Olson, N. H., Cowsert, L. M., Olson, C. & Brown, J. C. (1991). Structures of bovine and human papillomaviruses. Analysis by cryoelectron microscopy and three-dimensional image reconstruction. Biophysical Journal 60, 1445-1456.
Breuil, G., Bonami, J. R., Pepin, J. F. & Pichot, Y. (1991). Viral infection (picorna-like virus) associated with mass mortalities in hatchery-reared sea bass (Dicentrarchus labrax) larvae and juveniles. Aquaculture 97, 109-116.
Caparros-Wanderley, W., Savage, N., Hill-Perkins, M., Layton, G., Weber, J. & Davies, D. H. (1999). Intratype sequence variation among clinical isolates of the human papillomavirus type 6 L1 ORF, clustering of mutations and identification of a frequent amino acid sequence variant. The Journal of General Virology 80, 1025-1033.
Chen, Y., Ghim, S. J., Jenson, A. B. & Schlegel, R. (1998). Mutant canine oral papillomavirus L1 capsid proteins which form virus- like particles but lack native conformational epitopes. The Journal of General Virology 79, 2137-2146.
Chi, S. C., Hu, W. W. & Lo, B. J. (1999). Establishment and characterization of a continuous cell-line (GF-1) derived from grouper, Epinephelus coioides (Hamilton) - A cell-line susceptible to grouper nervous necrosis virus (GNNV). Journal of Fish Diseases 22, 173-182.
Comps, M., Trindade, M. & Delsert, C. (1996). Investigation of fish encephalitis viruses (FEV) expression in marine fishes using DIG-labelled probes. Aquaculture 143, 113-121.
Crawford, S. E., Labbe, M., Cohen, J., Burroughs, M. H., Zhou, Y. J. & Estes, M. K. (1994). Characterization of virus-like particles produced by the expression of rotavirus capsid proteins in insect cells. Journal of Virology 68, 5945-5952.
Dannevig, B. H., Nilsen, R., Modahl, I., Jankowska, M., Taksdal, T. & Press, C. M. (2000). Isolation in cell culture of nodavirus from farmed Atlantic halibut Hippoglossus hippoglossus in Norway. Diseases of Aquatic Organisms 43, 183-189.
Dong, X. F., Natarajan, P., Tihova, M., Johnson, J. E. & Schneemann, A. (1998). Particle polymorphism caused by deletion of a peptide molecular switch in a quasi-equivalent virus. Journal of Virology 72, 6024-6033.
Delos, S. E., Montross, L., Moreland, R. B. & Garcea, R. L. (1993). Expression of the polyomavirus VP2 and VP3 proteins in insect cells, coexpression with the major capsid protein VP1 alters VP2/VP3 subcellular localization. Virology 194, 393–398.
Delsert, C., Morin, N. & Comps, M. (1997a). A fish encephalitis virus that differs from other nodaviruses by its capsid protein processing. Archives of Virology 142, 2359-2371.
Delsert, C., Morin, N. & Comps, M. (1997b). Fish nodavirus lytic cycle and semipermissive expression in mammalian and fish cell cultures. Journal of Virology 71, 5673-5677.
Estes, M. K. & Cohen, J. (1989). Rotavirus gene structure and function. Microbiological Reviews 53, 410-449.
Favre, M. (1975). Structural polypeptides of rabbit, bovine and human papillomaviruses. Journal of Virology 15, 1239-1247.
Fernandez, F. M., Conner, M. E. & Parwani, A. V. (1998). Passive immunity to bovine rotavirus in newborn calves fed colostrum supplements from cow simmunized with recombinant SA11 rotavirus core-like particle (CLP) or virus-like particle (VLP) vaccines. Vaccine 16, 507-516.
Fisher, A. J., & Johnson. J. E. (1993). Ordered duplex RNA controls capsid architecture in an icosahedral animal virus. Nature 361,176–179.
Fleming, A. (1922). On a Remarkable Bacteriolytic Element Found in Tissues and Secretions. Proceedings of the Royal Society of London. Series B 93, 306-317.
Fluckinger, M., Haas, H., Merschak, P., Glasgow, B. J. & Redl, B.(2004). Human Tear Lipocalin Exhibits Antimicrobial Activity by Scavenging Microbial Siderphores. Antimicrob Agents Chemother 48, 3367-3372.
French, T. J. & Roy, P. (1990). Synthesis of blue-tongue virus (BTV) core-like particles by a recombinant baculovirus expressing the two major structural core proteins of BTV. Journal of Virology 64, 1530-1536.
Fukuda, Y., Nguyen, H. D., Furuhashi, M. & Nakai, T. (1996). Mass mortality of cultured sevenband grouper, Epinephelus septemfasciatus, associated with viral nervous necrosis. Fish Pathology 31, 165-170.
Gallagher, T. M., Friesen, P. D. & Rueckert, R. R. (1983). Autonomous replication and expression of RNA1 of black beetle virus. Journal of Virology 46, 481-489.
Greer, C. E., Petracca, R., Buonamassa, D. T., Di Tommaso, A., Gervase, B., Reeve, R. L., Ugozzoli, M., Van Nest, G., De Magistris, M. T. & Bensi, G. (2000). The comparison of the effect of LTR72 and MF59 adjuvants on mouse humoral response to intranasal immunization with human papillomavirus type 6b (HPV-6b) virus-like particles. Vaccine 19, 1008-1012.
Grotmol, S., Nerland, A., Biering, E., Totland, G. & Nishizawa, T. (2000).Characterisation of the capsid protein gene from a nodavirus strain affecting the Atlantic halibut Hippoglossus hippoglossus and design of an optimal reverse-transcriptase polymerase chain reaction (RT-PCR) detection assay. Diseases of Aquatic Organism 39, 79–88.
Guo, Y. X., Wei, T., Dallmann, K. & Kwang, J. (2003). Induction of caspase-dependent apoptosis by betanodavirus GGNNV and demonstration of protein α as an apoptosis inducer. Virology 308, 74-82.
Harro, C. D., Pang, Y. Y., Roden, R. B., Hildesheim, A., Wang, Z., Reynolds, M. J., Mast, T. C., Robinson, R., Murphy, B. R., Karron, R. A., Dillner, J., Schiller, J. T. & Lowy, D. R. (2001). Safety and immunogenicity trial in adult volunteers of a human papillomavirus 16 L1 virus-like particle vaccine. Journal of the National Cancer Institute 93, 284-292.
Hagensee, M. E., Olson, N. H., Baker, T. S. & Galloway, D. A. (1994). Three-dimensional structure of vaccinia virus-produced human papillomavirus type 1 capsids. Journal of virology 68, 4503-4505.
Hagensee, M. E., Yaegashi, N. & Galloway, D. A. (1993). Self-assembly of human papillomavirus type 1 capsids by expression of the L1 protein alone or by coexpression of the L1 and L2 capsid proteins. Journal of Virology 67, 315-322.
Iwamoto, T., Mori, K., Arimoto, M. & Nakai, T. (1999). High permissivity of the fish cell line SSN-1 for piscine nodavirus. Diseases of Aquatic Organisms 39, 37-47.
Iwamoto, Y., Nakamura, R., Watanabe, T. & Tsunemitsu, A. (1970). Purification and amino acid analysis of human parotid saliva lysozyme. Journal of dental research 49, 1104-1110.
Jansen, K. U., Rosolowsky, M., Schultz, L. D., Markus, H. Z., Cook, J. C., Donnelly, J. J., Martinez, D., Ellis, R. W. & Shaw, A. R. (1995). Vaccination with yeast-expressed cottontail rabbit papillomavirus (CRPV) virus-like particles protects rabbits from CRPV-induced papilloma formation. Vaccine 13, 1509-1514.
Krondiris, J. V., & Sideris, D. C. (2002). Intramolecular disulfide bonding is essential for betanodavirus coat protein conformation. The Journal of General Virology 83,2211-2214.
Laurent, S., Vautherot, J. F., Madelaine, M. F., Le Gall, G. & Rasschaert, D. (1994). Recombinant rabbit hemorrhagic disease virus capsid protein expressed in baculovirus self-assembles into virus-like particles and induces protection. Journal of Virology 68, 6794-6798.
Lavelle, L., Michel, JP., & Gingery, M. (2007) The disassembly, reassembly and stability of CCMV protein capsids. Journal of virological methods 146, 311-316.
Lee, K. W., Chi, S. C. & Cheng, T. M. (2002). Interference of the life cycle of fish nodavirus with fish retrovirus. Journal of General Virology 83, 2469-2474.
Lin, C. S., Lu, M. W., Tang, L., Liu, W., Chao, C. B., Lin, C. J., Krishna, N. K., Johnson, J. E. & Schneemann, A. (2001). Characterization of virus-like particles assembled in a recombinant baculovirus system expressing the capsid protein of a fish nodavirus. Virology 290, 50-58.
Marshall, D. & Schneemann, A. (2001). Specific packaging of nodaviral RNA2 requires the N-terminus of the capsid protein. Virology 285, 165-175.
Milburn, D, Laskowski R. A., & Thornton J.M. (1998). Sequences annotated by structure: a tool to facilitate the use of structural information in sequence analysis. Protein engineering 10, 855-859.
Mori, K., Mangyoku, T., Iwamoto, T., Arimoto, M., Tanaka, S., & Nakai, T. (2003). Serological relationships among genotypic variants of betanodavirus. Diseases of Aquatic Organism 57, 19–26.
Mori, K., Nakai, T., Muroga, T. K., Arimoto, M., Mushiake, K. & Furusawa, I. (1992). Properties of new virus belonging to Nodaviridae found in larval striped jack (Pseudocaranx dentex) with nervous necrosis. Virology 187, 368-371.
Munday, B. L., Kwang, J. & Moody, N. (2002). Betanodavirus infection of teleost fish: a review. Journal of Fish Disease 25, 127–142.
Munday, B. L., Langdon, J. S., Hyatt, A. & Humphrey, J. D. (1992). Mass mortality associated with a viral-induced vacuolating encephalopathy and retinopathy of larvae and juvenile barramundi, Lates calcarifer bloch. Aquaculture 103, 197-211.
Munday, B. L. & Nakai, T. (1997). Special topic review: Nodaviruses as pathogens in larval and juvenile marine finfish. World Journal of Microbiology & Biotechnology 13, 375-381.
Mushiake, K., Nishizawa, T., Nakai, T., Furusawa I. & Muroga, K. (1994).Control of VNN in striped jack: selection of spwnerss based on the detection of SJNNV gene by polymerase chain reaction (PCR). Fish Pathology 29, 177-182.
Nagai, T. & Nishizawa, T. (1999). Sequence of the non-structural protein gene encoded by RNA1 of striped jack nervous necrosis virus. Journal of General Virology 80, 3019-3022.
Nardelli-Haefliger, D., Roden, R. B., Benyacoub, J., Sahli, R., Kraehenbuhl, J. P., Schiller, J. T., Lachat, P., Potts, A. & De Grandi, P. (1997). Human papillomavirus type 16 virus-like particles expressed in attenuated Salmonella typhimurium elicit mucosal and systemic neutralizing antibodies in mice. Infection and Immunity 65, 3328-3336.
Neumann, N. F., Stafford, J. L., Barreda, D., Ainsworth, A. J. & Belosevic, M. (2001). Antimicrobial mechanisms of fish phagocytes and their role in host defense. Developmental & Comparative Immunology 25, 807-825
Nishizawa, T., Mori, K., Furuhashi, M., Nakai, T., Furusawaand, I., Rodgers, R. E., Chang, D., Cai, X. & Consigli, R. A.(1994). Purification of recombinant budgerigar fledgling disease virus VP1 capsid protein and its ability for in vitro capsid assembly. Journal of Virology 68, 3386-3390.
Nishizawa, T., Furuhashi, M., Nakai, T., Nakai, T. & Muroga, K. (1997). Genomic classification of fish nodaviruses by molecular phylogenetic analysis of the coat protein gene. Applied and environmental microbiology 63, 1633-1636.
Nishizawa, T., Mori, K., Nakai, T. & Muroga, K. (1995). Neutralizing monoclonal antibodies to striped jack nervous necrosis virus (SJNNV). Fish Pathology 30, 111-114.
Noad, R. & Roy, P. (2003). Virus-like particles as immunogens. TRENDS in Microbiology 11, 438-444.
Pfister, H., Gissmann, L. & Zur, Hausen, H. (1977). Partial characterization of the proteins of human papilloma viruses (HPV) 1–3. Virology 83, 131-137.
Prasad, B. V., Wang, G. J., Clerx, J. P. & Chiu, W. (1988). Three-dimensional structure of rotavirus. Journal of Molecular Biology 199, 269–275.
Schneemann, A., & Marshall D. (1998). Specific encapsidation of nodavirus RNAs is mediated through the C terminus of capsid precursor protein alpha. Journal of Virology. 72, 8738-8746.
Skliris, G. P., Krondiris, J. V., Sideris, D. C., Shinn, A. P., Starkey, W. G. & Richards, R. H. (2001). Phylogenetic and antigenic characterization of new fish nodavirus isolates from Europe and Asia. Virus Research 75, 59-67.
Sommerset I, & Nerland A. (2004).Complete sequence of RNA1 and subgenomic RNA3 of Atlantic halibut nodavirus (AHNV). Diseases of Aquatic Organism 58, 117–125.
Suzich, J. A., Ghim, S., Palmer-Hill, F. J., White, W. I., Tamura, J. K., Bell, J. A., Newsome, J. A., Bennet Jenson, A. & Schlegel, R. (1995). Systemic immunization with papillomavirus L1 protein completely prevents the development of viral mucosal papillomas. Proceedings of the National Academy of Sciences of the United States of America 92, 11553-11557.
Tan, C., Huang, B., Chang, S. F., Ngoh, G. H., Munday, B., Chen, S. C. & Kwang, J. (2001). Determination of the complete nucleotide sequences of RNA1 and RNA2 from greasy grouper (Epinephelus tauvina) nervous necrosis virus, Singapore strain. Journal of General Virology 82, 647–653.
Tang, L., Lin, C. S., Krishna, N. K., Yeager, M., Schneemann, A. & Johnson, J. E. (2002). Virus-like particles of a fish nodavirus display a capsid subunit domain organization different from that of insect nodaviruses. Journal of Virology 76, 6370-6375.
Trus, B. L., Roden, R. B., Greenstone, H. L., Vrhel, M., Schiller, J. T. & Booy, F. P. (1997). Novel structural features of bovine papillomavirus capsid revealed by a three-dimensional reconstruction to 9 Å resolution. Nature Structural Biology 4, 413-420.
Wery, J. P., Reddy, V. S., Hosur, M. V. & Johnson, J. E. (1994). The refined three-dimensional structure of an insect virus at 2.8 Å resolution. Journal of Molecular Biology 235, 565-586.
Wizemann, H. & Brunn, A. V. (1999). Purification of E. coli-expressed His-tagged hepatitis B core antigen by Ni2+ chelate affinity chromatography. Journal of Virology Methods 77, 189-197.
Wu, Y. M. & Lin, C. S. (2005). Role of metal ion-mediated dissassembly and reassembly of virus-Like particles of dragon grouper nervous necrosis nirus. The 105th General Meeting of American Society for Microbiology, Atlanta. T-002.
Yoshikoshi, K. & Inoue, K. (1990). Viral nervous necrosis in hatchery-reared larval and juveniles of Japanese parrotfish, Oplegnathus fasciatus (Temminck & Schlegel). Journal of Fish Diseases 13, 69-77.
Zhang, L. F., Zhou, J., Chen, S., Cai, L. L., Bao, Q. Y., Zheng, F. Y., Lu, J. Q., Padmanabha, J., Hengst, K., Malcolm, K. & Frazer, I. H. (2000). HPV6b virus like particles are potent immunogens without adjuvant in man. Vaccine 18, 1051-1058
Zhou, J., Stenzel, D. J., Sun, X. Y. & Frazer, I. H. (1993). Synthesis and assembly of infectious bovine papillomavirus particles in vitro. Journal of General Virology 74, 763-768.
Zlotnick, A., Reddy, V. S., Dasgupta, R., Schneemann, A., Ray, W. J., Rueckert, R. R. & Johnson, J. E. (1994). Capsid assembly in a family of animal viruses primes an autoproteolytic maturation that depends on a single aspartic-acid residue. The Journal of Biological Chemistry 269, 13680-13684.
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