Responsive image
博碩士論文 etd-0627102-101553 詳細資訊
Title page for etd-0627102-101553
論文名稱
Title
以粒線體核酸序列與頭骨形態分析長鬃山羊屬 (偶蹄目:牛科)之親緣關係與生物地理
Phylogeny and Biogeography of the Genus Capricornis (Artiodactyla: Bovidae) Based on Mitochondrial DNA Sequences and Cranial Morphometrics
系所名稱
Department
畢業學年期
Year, semester
語文別
Language
學位類別
Degree
頁數
Number of pages
132
研究生
Author
指導教授
Advisor
召集委員
Convenor
口試委員
Advisory Committee
口試日期
Date of Exam
2002-06-21
繳交日期
Date of Submission
2002-06-27
關鍵字
Keywords
長鬃山羊、偶蹄目、粒線體核酸、親緣關係、頭骨形態、牛科、生物地理
phylogeny, Capricornis, Bovidae, cranial morphometrics, biogeography, Artiodactyla, mitochondrial DNA
統計
Statistics
本論文已被瀏覽 5744 次,被下載 4304
The thesis/dissertation has been browsed 5744 times, has been downloaded 4304 times.
中文摘要
長鬃山羊屬(Capricornis Ogilby, 1837),目前分類上共有3個有效種,分佈在中國南部、西藏、緬甸、中南半島、馬來半島、蘇門答臘島、日本本州、四國、九州,及台灣。本研究以粒線體細胞色素b完整序列(1140 bp),分析台灣、日本,及中國大陸三地長鬃山羊間之遺傳距離與親緣關係。以鄰接法與最簡約法得到之親緣關係樹,可將長鬃山羊分為三大群:台灣長鬃山羊、日本長鬃山羊及大陸蘇門答臘長鬃山羊,其中台灣與日本長鬃山羊之間親緣關係較遠,而台灣與大陸的蘇門答臘長鬃山羊親緣關係較近,且在台灣島內與日本群島內之長鬃山羊皆已有族群分化之現象,另外在長鬃山羊與斑羚間已具明顯的遺傳差異。由頭骨形態主成分與區別分析所得到之結果,顯示出台灣、日本、中國大陸三地長鬃山羊與斑羚在頭骨特徵上具有明顯差異,因此可依據頭骨形態特徵之差異作為長鬃山羊與斑羚鑑別上之一良好工具。此外,由第四紀古地質及長鬃山羊化石的證據,可以推論長鬃山羊可能是在更新世早期時,由中國大陸西南山地,藉由第四冰河期海退所形成的渤海-東海-黃海-台灣海峽陸橋遷徙分布來到台灣島與日本群島,並在更新世冰河期結束後,隔離於台灣島與日本群島,隨著時間而隔離種化成現今的台灣與日本長鬃山羊。
Abstract
The genus Capricornis Ogilby, 1837, is divided into three species and widely distributed in sourthern China, Tibet, Myanmar, IndoChinese peninsula, Malaysia peninsula, Sumatra, Japanese archipelagos and Taiwan. Using complete cytochrome b sequences (1140 bp) analyzes the genetic variation and phylogeny of genus Capricornis from Taiwan, Japan and Mainland China. Constructed by both distance and maximum parsimony methods, the phyloenetic tree distinguish the Capricornis to three clades: Formosan serow, Japanese serow, and Sumatran serow from mainland China. Formosan serow is more familiar with Sumatran serow than Japanese serow. Local populations of Formosan serow of Taiwan island and Japanese serow of the Japanese archipelagos are already differentiated. Serow and goral are apparently distinguishable. The results of Principal Component Analysis and Discriminant Analysis show that serows from Taiwan, Japan and mainland China and goral are apparently distinguishable at morphological characters. The variation of morphological analysis may be a good tool to identify serow and goral. From the paleogeology and fossil records of serow of Quaternary, we could infer that ancestors of serow from southwestern mountain of mainland China migrated to Taiwan island and Japanese archipelagos through the land bridge of east Asian islands to mainland China in the early Pleistocene caused by the glaciation of Quaternary, then separated from mainland of east Asia and speciation of serow occured in Taiwan island and Japanese archipelagos after the end of the glaciation of Quaternary.
目次 Table of Contents
壹、前言……………………………………….……………………………………1
貳、材料與方法……………………………….……………………………………4
參、結果……………………………………………………………….…………..15
肆、討論…………………………………………………………………..………..22
伍、結論………………………………………………………….………………...36
陸、參考文獻…………………………………………………………….………...37
柒、附錄…………………….……………………………………...…….…….….107

參考文獻 References
Allen, G. M. 1940. The mammals of China and Mongolia. Amer. Mus. Nat. Hist. 2:1227-1238.
Anderson, S., M. H. de Bruijn, A. R. Coulson, I. C. Eperon, F. Sanger and I. G. Young. 1982. Complete sequence of Bovine mitochondrial DNA: conserved features of the mammalian mitochondrial genome. J. Mol. Evol. 156:683-717.
Aoki, B. 1913. A hand-list of Japanese and Formosan mammals. Annot. Zool. Jap. 8:261-353.
Aquadro, C. F. and B. D. Greenberg. 1983. Human mitochondrial DNA variarion and evolution: analysis of nucleotide sequences from seven individuals. Genetics 103:287-312.
Avise, J. C. 1994. Molecular Markers, Natural History and Evolution. Chapman and Hall, New York.
Benirschke, K., H. Soma and T. Ito. 1972. The chromosomes of the Japanese serow, Capricornis crispus (Temminck). Proc. Japan Acad. 48:608-612.
Brown, W. M. 1981. Mechanism of evolution in animal mitochondrial DNA. Ann. New York Acad. Sci. 361:119-134.
Brown, W. M. 1985. The mitochondrial genome of animals. pp. 95-130. In R. J. MacIbtyre, ed. Molecular Evolutionary Genetics. Plenum, New York.
Brown, W. M., M. Geroge and A. G. Wilson. 1979. Rapid evolution of animal mitochondrial DNA. Proc. Natl. Acad. Sci. USA. 76:1967-1971.
Caughley, G. 1965. Horn rings amd tooth eruption as criteria of age in the Himalayan thar, Hemitragus jemlahicus. New Zealand J. Sci. 8:333-351.
Chikuni, K., Y. Mori, T. Tabata, M. Saito, M. Monma and M. Kosugiyama. 1995. Molecular phylogeny based on the k-casein and cytochrome b sequences in the mammalian suborder Ruminantia. J. Mol. Evol. 41:859-866.
Cook, C. E., Y. Wang and G. Sensabaugh. 1999. A mitochondrial control region and cytochrome b phylogeny of sika deer (Cervus nippon) and report of tandem repeats in the control region. Mol. Phyl. Evol. 12:47-56.
Corbet, G. B. 1978. The Mammals of the Palaearctic Region: a Taxonomic Review. Brit. Mus. (Nat. Hist.) Press, London.
Degli Espoti, M., S. De Vries, M. Crimi, A. Ghelli, T. Patarnello, and A. Meyer. 1993. Mitochondrial cytochrome b: evolution and structure of the protein. Biochim. Biophys. Acta 1143:243-271.
Dolan, J. M. 1963. Beitrag zur systematischen Gliedweung des Tribus Rupicaprini. Zeit. Zool. Syst. Evol. Forsh. 1:311-407.
Eck, R. V. and M. O. Dayhoff. 1966. Atlas of Protein Sequance and Structure 1966. Nat. Biomed. Res. Found., Silver Spring, Maryland.
Ellerman, J. R. and T.C.S. Morrison–Scott. 1966. Checklist of Palaearctic and Indian Mammals. Brit. Mus. (Nat. Hist.) Press, London.
Erickson, J. A., A. E. Anderson, D. E. Medin and D. C. Bowden. 1970. Estimating ages of mule deer – an evaluation of technique accuracy. J. Wildl. Mgmt. 34:523-531.
Felsenstein, J. 1995. PHYLIP: Phylogeny Inference Package (version 3.57c). University of Washington, Seattle.
Fischer, H. and H. Hőhn. 1972. Der karyotype der serau (Capricornis sumatrensis Bechstein, 1799). Giessener Beitr. Erbpath. Zuchthyg. 4:8-15.
Gatesy, J., G. Amato, E. S. Vrba, G. Schaller and R. DeSalle. 1997. A cladistic analysis of mitochondrial ribosomal DNA from the Bovidae. Mol. Phyl. Evol. 7:303-319.
Gatesy, J., D. Yelon, R. Desalle and E. S. Vrba. 1992. Phylogeny of the Bovidae (Artiodactyla, Mammalia), based on mitochondrial ribosomal DNA sequences. Mol. Biol. Evol. 9:433-446.
Geist, V. 1987. On the evolution of the Caprinae. pp. 3-40. In H. Soma, ed. The Biology and Management of Capricornis and Related Mountain Antelopes. Croom Helm, New York.
Gray, J. E. 1862. Notice of a new leopard from Japan, and description of a new "wild goat" (Capricornis swinhoei) from the island of Formosa. Ann. Mag. Nat. Hist. 3:320.
Gropp, A., D. Giers, R. Fernandez-Donoso, L. Tiepolo and M. Fraccaro. 1970. The chromosomes of the chamois (tribe Rupicaprini Simpson). Cytogenetics 9:1-8.
Groves, C. P. and P. Grubb. 1985. Reclassification of the serows and gorals (Nemorhardus: Bovidae). pp. 45-50. In S. Lovari, ed. Biology and Management of Mountain Ungulates. Cambridge Univ. Press, Cambridge.
Groves, C. P. and G. F. Shields. 1996. Phylogenetics of the Caprinae based on cytochrome b sequence. Mol. Phyl. Evol. 5:467-476.
Halanych, K. M., J. R. Demboski, B. J. van Vuuren, D. R. Klein and J. A. Cook. 1999. Cytochrome b phylogeny of north American hares and jackrabbits (Lepus, Lagomorpha) and the effects of saturation in outgroup taxa. Mol. Phyl. Evol. 11:213-221.
Hall, T. A. 1999. BioEdit: a User-Friendly Biological Sequence Alignment Editor and Analysis Program for Windows 95/98/NT. Nucl. Acids. Symp. Ser. 41:95-98.

Hassanin, A. and E. J. P. Douzery. 1999. The tribal radiation of family Bovidae (Artiodactyla) and the evolution of the mitochondrial cytochrome b gene. Mol. Phyl. Evol. 13:227-243.
Hassanin, A., E. Pasquet and J. D. Vigne. 1998. Molecular systematics of the subfamily Caprinae (Artiodactyla, Bovidae) as determined from cytochrome b sequences. J. Mamm. Evol. 5:217-236.
Hemming, J. E., 1969. Cemental deposition, tooth succession, and horn development as criteria of age in Dall sheep. J. Wildl. Mgmt. 33:552-558.
Higuchi, R., C. H. von Beroldingen, G. F. Sensabaugh and H. A. Erlich. 1988. DNA typing from single hairs. Nature 332:543-546.
Howell, N. 1989. Evolutionary conservation of protein regions in the proton-motive cytochrome b and their possible roles in redox catalysis. J. Mol. Evol. 29:157-169.
Iinuma, Y., H. Endo, S. Maso and T. Nishida. 1998. Osteometry of skull of sika deer in Kuchinoerabu island, Southwestern Japan. Bull. Nat. Sci. Mus., Tokyo, Ser. A. 24:61-68.
Irwin, D. M., T. D. Kocher and A. C. Wilson. 1991. Evolution of the cytochrome b gene of mammals. J. Mol. Evol. 32:128-144.
Ito, T. 1971. On the oestrous cycle and gestation period of Japanese serow, Capricornis crispus. J. Mamm. Soc. Japan 5:104-108.
Kawamura, Y. 1982. Biogeographical aspects of the Quaternary mammals of Japan with special reference to the relationship with East Asia. Honyurui Kagaku (Mammalian Science) 43-44:99-130.
Kimura, M. 1980. A simple model for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J. Mol. Evol. 16:111-120.
Kimura, M. 2000. Paleogeography of the Ryukyu Islands. Tropics 10:5-24.
Kluge, A. G. and J. S. Farris. 1969. Quantitative phyletics and the evolution of anurans. Syst. Zool. 18:1-32.
Kocher, T. D., W. K. Thomas and A. Meyer. 1989. Dynamics of mitochondrial DNA evolution in animals : amplication and sequencing with conserved primers. Proc. Natl. Acad. Sci. USA. 86:6196-6200.
Komori, A. 1975. Survey on the breeding of Japanese serows, Capricornis crispus, in captivity. J. Jap. Assoc. Zool. Gard. Aquar. 7:53-61.
Kumar, S., K. Tamura, I. B. Jakobsen and M. Nei. 2001. MEGA2:Molecular Evolutionary Genetics Analysis Software. Arizona State University, Tempe, Arizona, USA.
Kurose, N., A. V. Abramov and R. Masuda. 2000. Intrageneric diversity of the cytochrome b gene and phylogeny of Eurasian species of genus Mustela (Mustelidae, Carnivora). Zool. Sci. 17:673-679.
Lekagul, B. and J. A. McNeely. 1977. Mammals of Thailand. Sahakarnbhat, Bangkok.
Li, W. H. and D. Graur. 1991. Fundamentals of Molecular Evolution. Sinauer Associates, Sunderland.
Lin, S. M., C. A. Chen and K. Y. Lue. 2002. Molecular phylogeny and biogeography of the grass lizards genus Takydromus (Reptilia: Lacertidae) of the east Asia. Mol. Phyl. Evol. 22:276-288.
Lydekker, F. R. S. 1913. Catalogue of the Ungulate Mammals in the British Museum (Nat. Hist.), 1. Brit. Mus. (Nat. Hist.) Press, London.
Margush, T. and F. R. McMorris. 1981. Consensus n-trees. Bulletin of Mathematical Biology 43:239-244.
Mead, J. I. 1989. Nemorhaeous goral. Mammalian Species 355:1-5.
Miura, S. 1985. Horn and cementum annulation as age criteria in Japanese serow. J. Wildl. Mgmt. 49:151-158.
Miura, S. 1986. Body and horn growth patterns in the Japanese serow, Capricornis crispus. J. Mamm. Soc. Japan 11:1-13.
Miura, S. and K. Yasui. 1985. Validity of tooth eruption-wear patterns as age criteria in the Japanese serow, Capricornis crispus. J. Mamm. Soc. Japan 10:169-178.
Miura, S. and N. Maruyama. 1986. Winter weight loss in Japanese serow. J. Wildl. Mgmt. 50:336-338.
Miura, S., I. Kita and M. Sugimura. 1987. Horn growth and reproductive history in female Japanese serow. J. Mamm. 68:826-836.
Miyamoto, M. M. and J. Cracraft. 1991. Phylogenetic Analysis of DNA Sequences. Oxford University Press, New York.
Miyamoto, M. M., S. M. Tanhauser and P. J. Laipis. 1989. Systematic relationship in the Artiodactyl tribe Bovini (family Bovidae), as determined from mitochondrial DNA sequences. Syst. Zool. 38:342-349.
Morris, P. 1972. A review of mammalian age determination methods. Mamm. Rev. 2:69-104.
Nakajima, Z. and Y. Kuwano. 1957. On the occurrence of the Quaternary mammalian fauna from the limestone fissures near Shiriya-zaki, Shimokita peninsula, Aomori prefecture, Japan. Shigenken-Iho 831:153-159.
Novakowski, N. S. 1965. Cemental deposition as an age criterion in bison, and the ralation of incisor wear, eye-lens weight, and dressed bison carcass weight to age. Can. J. Zool. 43:173-178.
Nowak, R. M. 1999 Walker’s Mammals of the World, sixth edition. The Johns Hopkins University Press, Baltimore.
Okata, Y. and T. Kakuta. 1970. Studies on Japanese serow, Capricornis crispus (Temminck). pp. 1-15. An investigation report of Japanese serow. 10th Annual publication of preservation of the serow at Mt. Suzuka. Mie.
Randi, E., N. Mucci, M. Pierpaoli and E. Douzery. 1998. New phylogenetic perspectives on the Cervidae (Artiodactyla) are provided by the mitochondrial cytochrome b gene. Proc. Roy. Soc. London 265:793-801.
Saitou, N. and M. Nei. 1987. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 4:406-425.
Sambrook, J., E. F. Fristch and T. Maniatis. 1989. Molecular Cloning: A Laboratory Manual, Second Edition, 1-3. Cold Spring Harbor Laboratory Press, New York.
Savage, D. E. and D. E. Russell. 1983. Mammalian Paleofaunas of the World. Addison Wesley, Reading, Mass.
Shackleton, D. M. 1997. Wild Sheep and Goats and Their Relatives. IUCN. Gland, Switzerland.
Sheldon, F. H.; L. A. Whittingham and D. W. Winkler. 1999. A comparison of cytochrome b and DNA hybridization data bearing on the phylogeny of swallows (Aves: Hirundinidae). Mol. Phyl. Evol. 11:320-331.
Shikama, T. 1949. The Kuzuu ossuaries-geological and palaeontological studies of the limestone fissure deposits, in Kuzuu, Tochigi Prefecture. Sci. Rep. Tohoku Univ. Ser. 2, 23:1-201.
Smith, M. F. and J. L. Patton. 1991. Variation in mitochondrial cytochrome b sequence in natural populations of south American akodontine rodents. Mol. Biol. Evol. 8:85-103.
Soma, H., H. Kada and K. Matoyoshi. 1987. Evolutionary pathways of Karyotypes of the tribe Rupicaprini. pp. 62-71. In H. Soma, ed. The Biology and Management of Capricornis and Related Mountain Antelopes. Croom Helm, New York.
Soma, H., H. Kada, K. Matoyoshi, T. Kiyokawa, T. Ito, M. Miyashita and K. Nagase. 1980. Some chromosomal aspects of Nemorhedus goral (goral) and Procapra guttutosa (Mongolian gazelle). Proc. Jpn. Acad. Ser. B. Phys. Biol. Sci. 56:273-277.
Soma, H., H. Kada, K. Matoyoshi, Y. Suzuki, C. Meckvichal, A. Mahannop and B. Vatanaromya. 1982. The chromosomes of the Sumatran serow (Capricornis sumatraensis). Proc. Jpn. Acad. Ser. B. phys. Biol. Sci. 58:265-269.
Soma, H., H. Kada, K. Matoyoshi, M. T. Tsai, T. Kiyokawa, T. Ito, K. P. Wang, B. P. C. Chen and S. C. Tseng 1981. Cytogenetic similarities between the Formosan serow Capricornis swinhoei and the Japanese serow Capricornis crispus. Proc. Jpn. Acad. Ser. B. Phys. Biol. Sci. 57:254-259.
Spradling, T. A., M. S. Hafner and J. W. Demastes. 2001. Differences in rate of cytochrome-b evolution among species of rodents. J. Mamm. 82:65-80.
Sugano, M., N. Tsuchimoto, M. Sugimura and Y. Suzuki. 1982. Morphometrical study on the skeletion of Japanese serows Ⅰ. Vertebral column and appendicular skeletion. Res. Bull. Fac. Agr. Gifu. Univ. 46:205-214.
Sugimura, M., Y. Suzuki, S. Kamiya and T. Fujita. 1981. Reproduction and prenatal growth in the wild Japanese serow, Capricornis crispus. Jap. J. Vet. Sci. 43:535-555.
Sugimura, M., Y. Suzuki, I. Kita, Y. Ide, S. Kodera and M. Yoshizawa. 1983. Prenatal development of Japaneses serow, Capricornis crispus, and reproduction in females. J. Mamm. 64:302-304.
Takezaki, N., A. Rzhetsky and M. Nei. 1995. Phylogentic test of the molecular clock and linearized trees. Mol. Biol. Evol. 12:823-833.
Tanaka, K., C. D. Solis, J. S. Masangkay, K. I. Maeda, Y. Kawamoto and T. Namikawa. 1996. Phylogenetic relationship among all living species of the genus Bubalus based on DNA sequences of the cytochrome b gene. Biochem. Genet. 34:443-452.
Teng, L. S. 1987. Stratigraphic records of the late Cenozoic penglai orogeny of Taiwan. Acta. Geol. Taiwanica 25:205-244.
Tiba, T., M. Sugimura and Y. Suzuki. 1981. Kinetik der Spermatogenese bei der Wollhaargemse (Capricornis crispus) Ⅰ. Geschlechtreife und Jahrezeitliche Schwankung. Zool. Anz. 207:16-24.
Tsuchimoto, N., M. Sugano, M. Sugimura and Y. Suzuki. 1982. Morphometrical study on the skeletion of Japanese serows Ⅱ. Skull. Res. Bull. Fac. Agr. Gifu. Univ. 46:215-221.
Turner, J. C. 1977. Cemental annulations as an age criterion in north American sheep. J. Wildl. Mgmt. 41:211-217.
Virginie, M. P. and J. J. Jaeger. 1999. Island biogeography of the Japanese terrestrial mammal assemblages: an example of a relict fauna. J. Biogeogr. 26:959-972.
Vrba, E. S. 1985. African Bovidae: evolutionary events since the Miocene. S. Afr. J. Sci. 81:263-266.
Von den Driesch, A. 1976. A Guide to the Measurement of Animal Bones from Archaeological Sites. Peabody Museum of Archaeology and Ethnology, Harvard University, Massachusetts.
Wehausen, J. D. and R. R. Ramey, Ⅱ. 2000. Craninal morphometric and evolutionary relationships in the northern range of Ovis canadensis. J. Mamm. 81:145-161.
Wurster, D. H. and K. Benirschke. 1968. The chromosomes of the Rocky Mountain goat (Oreamnos americnus). Mammal. Chrom. Newsl. 9:80-81.
Xia, X. 2000. Data Analysis in Molecular Biology and Evolution. Kluwer Academic Publishers, London.
Xia, X. and X. Xie. 2001. DAMBE: Data Analysis in Molecular Biology and Evolution. J. Heredity 92:371-373.
Yamamoto, S. 1967. Breeding Japanese serow Capricornis crispus in captivity. Intern. Zoo Yearbook 7:174-175.
Zhang, D. X. and G. M. Hewitt. 1996. Nuclear integrations:challenges for mitochrondrial DNA markers. Tree 11:247-251.
Zhu, D., B. G. M. Jamieson, A. Hugall and C. Moritz. 1994. Sequence evolution and phylogenetic signal in control-region and cytochrome b sequences of rainbow fishes (Melanotaeniidae). Mol. Biol. Evol. 11:672-683.
Zuckerkandl, E. and L. Pauling. 1962. Molecular disease, evolution, and genetic heterogeneity. In M. Kasha and B. Pullman, ed. Horizons in Biochemistry. Academic, New York.
千葉彬司。1991。ロхЁロ-
電子全文 Fulltext
本電子全文僅授權使用者為學術研究之目的,進行個人非營利性質之檢索、閱讀、列印。請遵守中華民國著作權法之相關規定,切勿任意重製、散佈、改作、轉貼、播送,以免觸法。
論文使用權限 Thesis access permission:校內校外完全公開 unrestricted
開放時間 Available:
校內 Campus: 已公開 available
校外 Off-campus: 已公開 available


紙本論文 Printed copies
紙本論文的公開資訊在102學年度以後相對較為完整。如果需要查詢101學年度以前的紙本論文公開資訊,請聯繫圖資處紙本論文服務櫃台。如有不便之處敬請見諒。
開放時間 available 已公開 available

QR Code