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博碩士論文 etd-0716104-124635 詳細資訊
Title page for etd-0716104-124635
論文名稱
Title
膀胱腫瘤抑制候選基因ANXA10與CDK2AP1量變曲線與功能之分析
Expression profiling and functional analysis on bladder tumor suppressor candidate genes, ANXA10 and CDK2AP1
系所名稱
Department
畢業學年期
Year, semester
語文別
Language
學位類別
Degree
頁數
Number of pages
134
研究生
Author
指導教授
Advisor
召集委員
Convenor
口試委員
Advisory Committee

口試日期
Date of Exam
2004-06-04
繳交日期
Date of Submission
2004-07-16
關鍵字
Keywords
ANXA10、腫瘤抑制候選基因、量變曲線、膀胱、CDK2AP1
tumor suppressor candidate genes, bladder, CDK2AP1, ANXA10, Expression profiling
統計
Statistics
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中文摘要
膀胱癌是泌尿生殖器系統好發的惡性腫瘤。雖然長期已有相關的研究報告出現,但還是無法瞭解可能涉及腫瘤癌化的分子。迄今為止,未發展出一種免疫組織或分子專一性的標識可以在臨床檢驗中有效的提早檢驗出膀胱癌癌化方法。本研究的目的是探討膀胱癌癌化相關新穎的基因。在本文第一章試圖說明膀胱癌的背景,分子標識,染色體異常與膀胱癌的關係。第二章,利用各種生物資訊學方式來註解相關的候選基因。其中21個候選基因來自三種不同時期的膀胱癌細胞建立具有1.5倍顯著差異之微陣列資料庫(成功大學劉校生博士)。另外的八個腫瘤抑制候選基因則是來自經異黃酮處理或未處理的RT4細胞株所建立的抑制性減除雜合技術(SSH) cDNA資料庫。除了註解外,這八個腫瘤抑制候選基因另外也進行定量表現分析。在定量表現結果中除了ANXA2,ANXA10與NUDT4外,其他的候選基因沒有發現有腫瘤抑制候選基特性出現。第三章是欲將在第二章其中提出ANXA10腫瘤抑制候選基因的表現加以分析,探討ANXA10蛋白質在細胞的分佈與製備多株抗體以便進一步進行試驗分析。在研究中獲知ANXA10大多數皆分佈在細胞質中。另外,有研究指出CDK2AP1基因為一種腫瘤抑制基因,在人類口腔鱗狀上皮細胞癌與結直腸癌中表現量降低,但是其在膀胱癌的表現與調控機制目前則不清楚,故在本文第四章中探討CDK2AP1 mRNA與蛋白質在膀胱癌的表現量。在本實驗初步的結果觀察到CDK2AP1在Ta與T1的表現量比T2與T3具有侵犯性組織的表現量來得多,但在具有侵犯性組織的表現量降低的機制與CDK2AP1生理功能至今尚未完全被研究透徹。在第五章中,我們提供了TSGH8301,UB37,TCCSUP和J82四種膀胱癌細胞株成功在SCID小鼠中建立人類腫瘤動物模式以便進行活體表現研究。
Abstract
Bladder cancer is a common malignancy affecting the genitourinary system. Although a large number of studies have been carried out on these areas for a long time, little is know about the molecular events which may involve in tumorigenesis. Until now, no profound immunohistological or molecular markers have been identified to define clinically relevant subsets of bladder cancer. The purpose of this thesis is to identify a novel bladder cancer carcinogenesis related genes. Chapter 1 attempts to illustrate the background, molecular markers, chromosomal abnormalities and genetic instability related to bladder cancer. In Chapter 2, various bioinformatics methodologies were used to annotate and identify candidate genes. Twenty-one genes were identified 1.5-fold up- or down-regulated in mRNA expression from RT4, TSGH8301 and J82, three different stages of bladder cancer cell lines by microarray chips (Dr. Liu, personal communications). Another eight candidate tumor suppressor genes were preliminarily identified from suppression subtractive hybridization (SSH) cDNA library of RT4 cell line based on an isoflavones-treated minus non-treated and further subjected to quantitative RT-PCR analyses to confirm the mRNA expression level in different stages of bladder cancer cell lines. Chapter 3 studies on the ANXA10 gene with special emphasis on its cloning, protein expression, subcellular localization and the preparation of polyclonal antibody. The result suggests that ANXA10 is a cytoplasmic protein in N18 cells. Chapter 4 analyzes the CDK2AP1 gene in mRNA and protein level at different bladder cancer cell lines and various specimens. In our preliminary observations, there are lost of CDK2AP1 expressions at invasive TCCs specimens when compared to noninvasive TCCs specimens. The mechanism of the tumor-associated loss of the CDK2AP1 expression is currently not clear. In Chapter 5, bladder cancer cell lines TSGH8301, UB37, TCCSUP and J82 in SCID mice xenograft model were established for further in vivo studies.
目次 Table of Contents
TABLES OF CONTENTS
中文摘要 I
ABSTRACT II
ABBREVIATION III
TABLES OF CONTENTS IV
CHAPTER 1. A REVIEW IN BLADDER CANCER 1
1. Background 1
1.1 Pathophysiology, Epidemiology, Frequency, Mortality/Morbidity, Gender, Age 1
1.2 Causes 1
1.3 Signs and Diagnostic 3
1.4 Staging of Bladder Cancers 4
Table 1.1 TMN staging for bladder cancer 5
1.5 Molecular Etiology Underlying Bladder Cancers/ Transitional Cell Carcinomas (TCCs) 6
1.6 Molecular Markers Related to Bladder Cancer 9
Table 1.2 Candidate genes and chromosomal regions that were identified to be related to bladder cancers 9
1.7 Chromosomal Abnormalities and Genetic Instability in Bladder Cancer 12
Table 1.3 Chromosomal abnormalities related to bladder cancer/TCC 13
1.8 Mitelman Database (CGAP, NCBI, USA) 15
Table 1.4 Unbalanced chromosomal abnormalities with TCCs morphology in bladder cancer (Data source: Mitelman Database) 16
Table 1.5 Numerical chromosomal trisomy abnormalities with TCCs morphology in bladder cancer (Data source: Mitelman Database) 17
Table 1.6 Numerical chromosomal monosomy abnormalities with TCCs morphology in bladder cancer (Data source: Mitelman Database) 18
Table 1.7 Balanced chromosomal abnormalities with TCCs morphology in bladder cancer (Data source: Mitelman Database) 19
Table 1.8 Numerical chromosomal abnormalities with others morphology than TCCs in bladder cancer (Data source: Mitelman Database) 19
CHAPTER 2. ANNOTATION ON CANDIDATE GENES OF HUMAN TRANSITIONAL CELL CARCINOMAS (TCCS) 20
1. Introduction 20
1.1 Annotation of Identified Candidate Genes 20
2. Materials and Methods 22
2.1 Cell Culture 22
Table 2.1 Details of cell lines used 22
2.2 RNA Isolation 23
2.3 cDNA Synthesis 24
2.4 Verification of Expression Level of Bladder Cancer Cell Lines by quantitative RT-PCR 24
2.4.1 Primer design 24
2.4.2 Optimization of primer concentrations 25
Table 2.2 Detail of primers used 26
2.4.3 Quantitative RT-PCR 26
2.4.4 Data analysis 27
3. Results 28
Table 2.3 Annotation of down-regulated genes identified from microarray chips 30
Table 2.4 Annotation of up-regulatied genes identified from microarray chips 32
Table 2.5 Annotations candidate genes from isoflavone treated minus non-treated on RT4 SSH cDNA library and their mRNA expression 35
4. Discussion 37
4.1 Down-regulated Markers from TCCs Cell Lines 37
4.2 Up-regulated Markers from TCCs Cell Lines 39
4.3 Validation of Candidate Genes Obtained from Suppression Subtractive Hybridization cDNA Library 41
5. Figures 42
CHAPTER 3. ANNEXIN A10 GENE EXPRESSION PROFILE IN BLADDER CANCER 44
1. Introduction 44
Table 3.1 ANXA10 conserved region similar to the motif in other annexin family member by PSI-BLAST sequence alignment 45
2. Materials and Methods 47
2.1 Cell Culture 47
Table 3.2 Detail of cell lines used 47
2.2 RNA Isolation 48
2.3 cDNA Synthesis 49
2.4 Cloning 49
2.5 Ligation and Transformation 50
2.6 Extraction of Plasmids DNA 51
2.7 Screening on Correct Inserts 52
2.8 Subcloning and Expression of ANXA10 Protein 52
Table 3.3 Primers used for subcloning 53
2.9 Transfection of Florescence-labeled Protein 54
2.10 Rapid Screening of ANXA10 Protein Expression 55
Table 3.4 SDS-PAGE gel formulations 56
2.11 Large-scale Protein Expression 56
2.11.1 Analysis of protein concentration and purity 58
Table 3.5 Preparation of diluted BSA standard 58
2.12 Production of Polyclonal Antisera 59
Table 3.6 Schedule for preparation of ANXA10 polyclonal antibody from rabbits 59
2.13 Verification of the mRNA Expression Level of ANXA10 in Bladder Cancer Cell Lines and Tissues by Quantitative RT-PCR 60
2.13.1 Quantitative RT-PCR 60
Table 3.7 Detail of primers used 61
2.13.2 Data analysis 61
3. Results 62
3.1 cDNA Construction 62
3.2 Expression ANXA10 His-tagged and GST-tagged Proteins 62
3.3 Prediction and Determination of the Subcellular Localization of ANXA10 Protein 62
4. Discussion 63
5. Figures 65
CHAPTER 4. CDK2AP1 GENE EXPRESSION PROFILE IN BLADDER CANCER 71
1. Introduction 71
2. Materials and Methods 73
2.1 Cell Culture 73
Table 4.1 Details of cell lines used 74
2.2 Bladder Tissues from TCCs Patients 74
Table 4.2 Summary of bladder tissues from patients used in our study* 75
Table 4.3 Bladder tissues and grading 75
2.3 RNA Isolation from Cell Lines 76
2.4 RNA Isolation from Tissues 77
2.5 cDNA Synthesis 77
2.6 Mutation Analysis 78
2.7 Verification of CDK2AP1 mRNA Expression Level of Bladder Cancer Cell Lines and Tissues by Quantitative RT-PCR 79
Table 4.4 Primers used in this study 79
2.7.1 Quantitative RT-PCR Detections 79
2.7.2 Data Analysis 80
2.8 Protein expression level of bladder cancer cell lines and tissues 81
2.8.1 Western blot analysis of cell lysates 81
Table 4.5 SDS-PAGE gel formulations 82
2.8.2 Preparation of pre-absorbed anti-CDK2AP1 antibody 82
2.8.3 Immunohistochemistry (IHC) 83
3. Results 84
3.1 Expression of CDK2AP1 mRNA in Bladder Cancer Cell Lines 84
3.2 Expression of CDK2AP1 mRNA in TCCs Specimens 84
4. Discussion 85
5. Figures 88
CHAPTER 5. SCID MICE XENOGRAFT MODEL 95
1. Introduction 95
2. Materials and Methods 95
2.1 Cell Culture 95
Table 5.1 Details of cell lines used 96
2.2 SCID Mice 96
2.3 Human Tumor Xenografts 96
3. Results 97
4. Discussion 97
5. Figures 98
REFERENCE 104
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