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博碩士論文 etd-0717106-132131 詳細資訊
Title page for etd-0717106-132131
論文名稱
Title
硫代乙醯胺誘導小鼠肝臟纖維化過程中 DC2 基因表現之探討
A study of DC 2 gene expression in thioacetamide-induced liver fibrosis in mice
系所名稱
Department
畢業學年期
Year, semester
語文別
Language
學位類別
Degree
頁數
Number of pages
71
研究生
Author
指導教授
Advisor
召集委員
Convenor
口試委員
Advisory Committee
口試日期
Date of Exam
2006-06-23
繳交日期
Date of Submission
2006-07-17
關鍵字
Keywords
肝臟纖維化、基因表現、寡醣轉移酶複合體
gene expression, thioacetamide-induced liver fibrosis
統計
Statistics
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中文摘要
DC2蛋白是先前本實驗室誘導老鼠腦幹死亡過程中發現的新未知基因之表現蛋白質。
經由生物資訊軟體分析發現,人及老鼠DC2蛋白均149個胺基酸,分子量約16.8 kDa。人及老鼠DC2蛋白的胺基酸序列只相差一個胺基酸,均為穿膜蛋白,穿膜三次。顯示二者高度相似。在各正常組織,DC2蛋白均有不同程度的蛋白質表現,其中人的肝臟DC2蛋白表現相對於其他器官較多,排名第四名,而老鼠肝臟排名較後面,為第23名。Shibatani et al (Shibatani et al,2005) 經質譜分析(mass spectrometry),認為DC2蛋白為寡醣轉移複合體(oligosaccharyltransferase complex; OST complex) 的次單位,參與醣化反應 (Glycosylation)。
將會誘導肝臟纖維化的硫代乙醯胺(Thioacetamide;TAA)加入老鼠飲用水,使老鼠肝臟纖維化。分析TAA誘導老鼠肝臟纖維化過程中,老鼠肝臟DC2蛋白之mRNA及protein表現情況,結果發現老鼠肝臟DC2 蛋白之mRNA expression :(1)在無TAA作用下是有表現;(2)在TAA作用下老鼠肝臟DC2 protein之mRNA expression有逐漸增加的趨勢 ;而蛋白質的表現則(1)在無TAA作用下是有DC2蛋白表現;(2)在TAA作用下老鼠肝臟DC2 protein表現有增加的現象。
Abstract
Gene of DC2 protein, a novel unknown gene, was identified previously in our laboratory while studying the death progression in the rat brain stem.
According to the search results of bioinformatics database, both human DC2 and house mouse DC2 are 149 amino acids long and 16.8 kDa. The entire sequence of human DC2 differs from house mouse DC2 by only a single amino acid substitution. The bioinformatics revealed that human DC2 and house mouse DC2 had three predicted transmembrane regions. These results suggest human DC2 and house mouse are highly homologous.
DC2 protein expresses differentially between organs. Human liver is the top fourth DC2-expressed organ, while house mouse liver is ranked 23rd DC2-expressed organ. Shibatani et al (Shibatani et al,2005) proposed DC2 protein as a potential subunit of mammalian Oligosaccharyltransferase (OST) after mass spectrometry analysis and suggested DC2 might involve in glycosylation.
House mouse liver fibrosis was induced by giving 300mg/L thioacetamide (TAA) in the drinking water for different periods of time, and then gene expression of house mouse DC2 of liver was analyzed. mRNA expression was found in normal house mouse liver and mRNA expression increased gradually after TAA administration. DC2 protein also found in normal house mouse liver and DC2 protein of house mouse liver increased after TAA administration.
目次 Table of Contents
中文摘要------------------------------------------------------------------------------------ 1
英文摘要------------------------------------------------------------------------------------ 3
壹、 緒論
1. 肝纖維化簡介--------------------------------------------------------------- 4
2. 硫代乙醯胺TAA (thioacetamide)使肝纖維化之機制-------------- 7
3. 什麼是DC2 蛋白--------------------------------------------------------- 9
4. 動物模式與醫學研究----------------------------------------------------- 10
5. 差異表現基因(Differentially expressed gene)--------------------- 12
6. 生物資訊 (Bioinformatics)---------------------------------------------- 13
貳、 實驗目的----------------------------------------------------------------------------- 15
參、 實驗材料與方法
1. 生物資訊分析-------------------------------------------------------------- 16
2. 檢體:肝纖維化之誘發-------------------------------------------------- 17
3. RT-PCR--------------------------------------------------------------------- 17
4. Western blotting----------------------------------------------------------- 20
肆、 結果與討論
1. 生物資訊分析結果-------------------------------------------------------- 24
2. DC2在TAA 作用下之mRNA的表現-------------------------------- 29
3. DC2在TAA 作用下之Western blotting的結果------------------- 34
伍、 結論------------------------------------------------------------------------------ 37
陸、 附圖------------------------------------------------------------------------------ 39
柒、 參考資料----------------------------------------------------------------------- 64
參考文獻 References
ELM
http://elm.eu.org/basicELM/cgimodel.py?fun=smartResult&userId=XvclbMaTpigV2&r=1
http://elm.eu.org/basicELM/cgimodel.py?fun=smartResult&userId=XvclbMaTphzd6&r=1

Ensembl Human GeneView
http://www.ensembl.org/Homo_sapiens/geneview?gene=ENSG00000198856

Ensembl Human MultiContig View
http://www.ensembl.org/Homo_sapiens/multicontigview?gene=ENSG00000198856;s1=Mus_musculus;g1=ENSMUSG00000041084;context=1000

Ensembl Mouse MultiContig View
http://www.ensembl.org/Mus_musculus/multicontigview?gene=ENSMUSG00000041084;s1=Homo_sapiens;g1=ENSG00000198856;context=1000

Ensembl Mouse ProtView
http://www.ensembl.org/Mus_musculus/protview?db=core;peptide=ENSMUSP00000046480

GeneCards
http://genome-www.stanford.edu/cgi-bin/genecards/cardsearch.pl?search=2310008M10Rik&search_type=kwd&speed=fast&mini=yes
http://genome-www.stanford.edu/cgi-bin/genecards/carddisp?DC2&search=2310008M10Rik

HPRD (Huamn Protein Reference Database)
http://www.hprd.org/protein/13120

MGI (Mouse Genome Informatics)
http://www.informatics.jax.org/searches/accession_report.cgi?id=MGI:1913607
http://www.informatics.jax.org/searches/homology_report.cgi?_Marker_key=50337

NCBI Conserved domain search
http://www.ncbi.nlm.nih.gov/Structure/cdd/wrpsb.cgi

NCBI Neucleotide
http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=nucleotide&val=31982672

NCBI Protein
http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?val=NP_079785.1
http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?val=NP_067050

PSORT WWW server
http://psort.ims.u-tokyo.ac.jp/cgi-bin/runpsort.pl
Stanford University SOURCE database
http://smd.stanford.edu/cgi-bin/source/sourceResult

SMART http://smart.embl-heidelberg.de/smart/show_motifs.pl

SOSUI http://sosui.proteome.bio.tuat.ac.jp/cgi-bin/adv_sosui.cgi

T-COFFEE
http://www.igs.cnrs-mrs.fr/Tcoffee/Tmp/tcfMR6871_5373.score_html

TMHMM server 2.0
http://www.cbs.dtu.dk/cgi-bin/nph-webface?jobid=TMHMM2,442BADE50212035F&opt=none

UCSC Genome Browser on Mouse
http://genome.ucsc.edu/cgi-bin/hgTracks?hgsid=69829166&db=mm7&position=chr3%3A130532408-130545905

Al-Bader A, Mathew TC, Abul H, Al-Sayer H, Singal PK, and Dashti HM. Cholangiocarcinoma and liver cirrhosis in relation to changes due to thioacetamide. Mol Cell Biochem. 2000;208(1-2):1-10.

Barker EA, Smuckler EA. Non hepatic thioacetamide injury II. The morphological features of proximal renal tubular injury. Am J Pathol. 1974;74(3):575-90.

Boeker KH, Haberkorn CI, Michels D, Flemming P, Manns MP, Lichtinghagen R. Diagnostic potential of circulating TIMP-1 and MMP-2 as markers of liver fibrosis in patients with chronic hepatitis Clin Chim Acta. 2002;316(1-2):71-81.

van der Bruggen T, Nijenhuis S, van Raaij E, Verhoef J, van Asbeck BS. Lipopolysaccharide-induced tumor necrosis factor alpha production by human monocytes involves the raf-1/MEK1-MEK2/ERK1-ERK2 pathway. Infect Immun. 1999;67(8):3824-9.

Chanda S and Mehendale M. Role of nutritional fatty acid and L-carnitine in the finaloutcome of thioacetamide hepatotoxicity. FASEB J. 1994;8(13):1061-8.

Chanda S and Mehendale HM. Nutritional impact on the final outcome of liver injury inflicted by model hepatotoxicants: effect of glucose loading. FASEB J. 1995;9(2):240-5.

Chilakapati J, Shankar K, Korrapati MC, Hill RA, Mehendale HM. Saturation toxicokinetics of thioacetamide: role in initiation of liver injury. Drug Metab Dispos. 2005;33(12):1877-85.

Chu CJ, Lee FY, Wang SS, Chang FY, Lin HC, Wu SL, Chan CC, Tsai YT, and Lee SD. Establishment of an animal model of hepatic encephalopathy. Zhonghua Yi Xue Za Zhi (Taipei). 2000;63(4):263-9.

Hufton SE, Moerkerk PT, Brandwijk R, de Bruine AP, Arends JW, Hoogenboom HR. A profile of differentially expressed genes in primary colorectal cancer using suppression subtractive hybridization. FEBS Lett. 1999;463(1-2):77-82.

Hung KS, Lee TH, Chou WY, Wu CL, Cho CL, Lu CN, Jawan B, Wang CH. Interleukin-10 gene therapy reverses thioacetamide-induced liver fibrosis in mice. Biochem Biophys Res Commun. 2005;336(1):324-31.

Hunter AL, Holsher MA, and Neal RA. Thioacetamide- induced hepatic necrosis. I. Involvement of the mixed-function oxidase-enzyme system. J Pharmacol Exp Ther. 1977;200(2):439-48.

Karaoglu D, Kelleher DJ, and Gilmore R. Functional characterization of Ost3p. Loss of the 34-kD subunit of the Saccharomyces cerevisiae oligosaccharyltransferase results in biased underglycosylation of acceptor substrates, J Cell Biol. 1995;130(3):567-77.

Knauer R, and Lehle L. The oligosaccharyltransferase complex from Saccharomyces cerevisiae. Isolation of the OST6 gene, its synthetic interaction with OST3, and analysis of the native complex, J Biol. Chem. 1999;274(24):17249-56.

Mangipudy RS, Chanda S, and Mehendale HM. Tissue repair response as a function of dose in thioacetamide hepatotoxicity. Environ Health Perspect. 1995;103(3):260-7.

Mangipudy RS, Rao PS, Andrews A, Bucci TJ, Witzmann FA, and Mehendale HM. Dose dependent modulation of cell death: Apoptosis versus necrosis in thioacetamide hepatotoxicity. Int J Toxicol. 1998;17(2):193-212.

Mehendale HM, Mangipudy RS, and Chanda S. Thioacetamide, in Comprehensive toxicology, Vol. IX: Hepatic and Gastrointestinal Toxicology. 1997; pp 483-491. Elsevier, NewYork.

Mehendale HM. Tissue repair: an important determinant of final outcome of toxicant induced injury. Toxicol Pathol. 2005;33(1):41-51.

Nie QH, Cheng YQ, Xie YM, Zhou YX, Cao YZ. Inhibiting effect of antisense oligonucleotides phosphorthioate on gene expression of TIMP-1 in rat liver fibrosis. World J Gastroenterol. 2001;7(3):363-9.

Nishizuka S, Tsujimoto H, Stanbridge EJ. Detection of differentially expressed genes in HeLa x fibroblast hybrids using subtractive suppression hybridization. Cancer Res. 2001;61(11):4536-40.

Porter WR and Neal RA. Metabolism of thioacetamide and thioacetamide-S-oxide by rat liver microsomes. Drug Metab Dispos. 1978;6(4):379-88.

Porter WR, Gudzinowicz MJ, and Neal RA. Thioacetamide-induced hepatic necrosis. II. Pharmacokinetics of thioacetamide and thioacetamide-S-oxide in the rat. J Pharmacol Exp Ther. 1979;208(3):386-91.

Ramaiah SK, Apte U, and Mehendale HM. Diet restriction as a protective mechanism in noncancer toxicity outcomes. A review. Int J Toxicol. 2000 Nov;19(6):413-29.

Shibatani T, David LL, McCormack AL, Frueh K, Skach WR. Proteomic analysis of mammalian oligosaccharyltransferase reveals multiple subcomplexes that contain Sec61, TRAP, and two potential new subunits. Biochemistry. 2005;44(16):5982-92

Wasser S and Tan CE. Experimental models of hepatic fibrosis in the rat. Ann Acad Med Singapore. 1999;28(1):109-11.

Yokota N, Uchijima M, Nishizawa S, Namba H, Koide Y. Identification of differentially expressed genes in rat hippocampus after transient global cerebral ischemia using subtractive cDNA cloning based on polymerase chain reaction. Stroke. 2001;32(1):168-74.

楊長傑。大鼠腦幹死亡過程差異表現基因之鑑定。國立中山大學碩士論文。2003。

陳俐君。人類DC2穿膜基因及其產物之分子特性分析。國立中山大學碩士論文。2004。

徐嘉偉。DC2蛋白之多株抗血清製備及定性分析。國立中山大學碩士論文。2005。
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