本研究利用mtDNA探討台灣匙指蝦科族群遺傳結構及分子親緣關係，以探討現有台灣匙指蝦科中種屬相關問題，並利用族群遺傳結構探討台灣陸封型擬多齒米蝦及多齒新米蝦的地理親緣關係。本研究將台灣匙指蝦科區分為6個近緣類群分別比較分析，共採樣紀錄台灣匙指蝦科有4屬32種，除過去發表的14種外，有8種為新紀錄種，10種未確認種。而分子序列資料可有效區分匙指蝦科種類，可進一步配合傳統型態分類，以期能釐清匙指蝦科種類之種屬關係。此外，研究結果顯示擬多齒米蝦具有明顯族群擴張現象，多齒新米蝦則沒有族群擴張現象。貝氏天際線點圖顯示，擬多齒米蝦族群的擴張時間點在距今約7萬年前緩慢上升，在距今4000-6000年前開始快速擴張。多齒新米蝦有明顯四個類群，分別為濁水溪(含)以南之南台類群、花蓮類群、濁水溪(不含)以北之北台類群及宜蘭類群。這些研究提供了台灣匙指蝦種化研究諸多基礎資訊。

In this study, mtDNA was used to examine the phylogenetic and molecular relationships of the freshwater shrimp family Atyidae. The phylogeographical variations of two landlocked Caridina pseudodenticulata and Neocaridina denticulata were also discussed. Four genera and 32 species of the Atyidae were identified and divided into 6 groups. In addition to 14 previously recorded species, eight of them are new records, while another 10 species remain unconfirmed. The combination of morphological and molecular characteristics can effectively differentiate species within the family Atyidae. Analysis of demographic parameters indicates a recent population expansion of C. pseudodenticulata, but not for N. denticulata. The result of Bayesian skyline plot analysis implies that the expansion of C. pseudodenticulata began about 70,000 years ago, followed by a very recent rapid expansion approximately 4,000-6,000 years ago. Four major geographical regions of N. denticulata can be identified, including: (1) Southern Taiwan group; (2) Hualian group; (3) Northern Taiwan group; and (4) Ilan group. The study on the phylogenetic relationship of Atyidae in Taiwan could provide valuable information for future study of speciation and geological variation in tropical island.

目錄
中文摘要……………………………………………………..…………………….Ⅰ
Abstract…..………………………………………………………….…..…. ……. II
表目錄………………………………………………………………….....……..... Ⅵ
圖目錄………………………………………………………………………….…. Ⅸ
附錄目錄……………………………………………………….……….…………XII

第一章

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